HSmetrics v2.8.1

Version of tools in docker image (../picard_mark_duplicates_2.8.1/container/Dockerfile)

ToolVersionLocation

java base image

8

-

picard

2.8.1

R

3.3.3

r-base for opnejdk:8

CWL

  • CWL specification 1.0

  • Use example_inputs.yaml to see the inputs to the cwl

  • Example Command using toil:

> toil-cwl-runner picard_hsmetrics_2.8.1.cwl example_inputs.yaml

Usage

> usage: picard_hsmetrics_2.8.1.cwl [-h]

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