Quickstart
Step 1: Clone the workflow
Step 2: Install Toil and cwltool
Note: you may use any CWL executor available, provided it works with your batch system
Step 3: Create an inputs file
As specified in:
pageInputs DescriptionStep 4 - Run the workflow with a CWL executor:
Or, to run the workflow on a HPC cluster using toil:
Note: To see help for the inputs for any cwl workflow you can use:
$ cwltool bam_collapsing.cwl --help
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